Target Binding Site Detail
| Target General Information | Top | ||||
|---|---|---|---|---|---|
| Target ID | T79031 | Target Info | |||
| Target Name | Beta-secretase 1 (BACE1) | ||||
| Synonyms | Membrane-associated aspartic protease 2; Memapsin-2; KIAA1149; Beta-site amyloid precursor protein cleaving enzyme 1; Beta-site APP cleaving enzyme 1; BACE; Aspartyl protease 2; Asp 2; ASP2 | ||||
| Target Type | Clinical trial Target | ||||
| Gene Name | BACE1 | ||||
| Biochemical Class | Peptidase | ||||
| UniProt ID | |||||
| Ligand General Information | Top | ||||
|---|---|---|---|---|---|
| Ligand Name | {(E)-(3R,6S,9R)-3-[(1S,3R)-3-((S)-1-Butylcarbamoyl-2-methyl-propylcarb amoyl)-1-hydroxy-butyl]-6-methyl-5, 8-dioxo-1,11-dithia-4,7-diaza-cyclo pentadec-13-EN-9-YL}-carbamic acid tert-butyl ester | Ligand Info | |||
| Canonical SMILES | CCCCNC(=O)C(C(C)C)NC(=O)C(C)CC(C1CSCC=CCSCC(C(=O)NC(C(=O)N1)C)NC(=O)OC(C)(C)C)O | ||||
| InChI | 1S/C31H55N5O7S2/c1-9-10-13-32-29(41)25(19(2)3)36-26(38)20(4)16-24(37)22-17-44-14-11-12-15-45-18-23(35-30(42)43-31(6,7)8)28(40)33-21(5)27(39)34-22/h11-12,19-25,37H,9-10,13-18H2,1-8H3,(H,32,41)(H,33,40)(H,34,39)(H,35,42)(H,36,38)/b12-11+/t20-,21+,22+,23+,24+,25+/m1/s1 | ||||
| InChIKey | YFVXRNZNJJXEKV-DYASFXQMSA-N | ||||
| PubChem Compound ID | 9547928 | ||||
| Drug Binding Sites of Target | Top | |||||
|---|---|---|---|---|---|---|
| PDB ID: 2F3E Crystal Structure of the Bace complex with AXQ093, a macrocyclic inhibitor | ||||||
| Method | X-ray diffraction | Resolution | 2.11 Å | Mutation | No | [1] |
| PDB Sequence |
SFVEMVDNLR
7 GKSGQGYYVE17 MTVGSPPQTL27 NILVDTGSSN37 FAVGAAPHPF47 LHRYYQRQLS 57 STYRDLRKGV67 YVPYTQGKWE77 GELGTDLVSI87 PHGPNVTVRA97 NIAAITESDK 107 FFINGSNWEG117 ILGLAYAEIA127 RPDDSLEPFF137 DSLVKQTHVP147 NLFSLQLCGA 157 SVGGSMIIGG178 IDHSLYTGSL188 WYTPIRREWY198 YEVIIVRVEI208 NGQDLKMDCK 218 EYNYDKSIVD228 SGTTNLRLPK238 KVFEAAVKSI248 KAASSTEKFP258 DGFWLGEQLV 268 CWQAGTTPWN278 IFPVISLYLM288 GEVTNQSFRI298 TILPQQYLRP308 VEDVATSQDD 318 CYKFAISQSS328 TGTVMGAVIM338 EGFYVVFDRA348 RKRIGFAVSA358 CHVHDEFRTA 368 AVEGPFVTLD378 MEDCGYN
|
|||||
|
|
GLY11
3.328
GLN12
3.274
GLY13
3.557
LEU30
3.205
ASP32
2.543
GLY34
2.850
SER35
3.893
VAL69
3.998
PRO70
2.958
TYR71
3.316
THR72
3.043
GLN73
3.067
PHE108
4.237
|
|||||
| PDB ID: 5QD4 Crystal structure of BACE complex with BMC023 | ||||||
| Method | X-ray diffraction | Resolution | 2.11 Å | Mutation | No | [2] |
| PDB Sequence |
SFVEMVDNLR
7 GKSGQGYYVE17 MTVGSPPQTL27 NILVDTGSSN37 FAVGAAPHPF47 LHRYYQRQLS 57 STYRDLRKGV67 YVPYTQGKWE77 GELGTDLVSI87 PHGPNVTVRA97 NIAAITESDK 107 FFINGSNWEG117 ILGLAYAEIA127 RPDDSLEPFF137 DSLVKQTHVP147 NLFSLQLCGA 157 SVGGSMIIGG178 IDHSLYTGSL188 WYTPIRREWY198 YEVIIVRVEI208 NGQDLKMDCK 218 EYNYDKSIVD228 SGTTNLRLPK238 KVFEAAVKSI248 KAASSTEKFP258 DGFWLGEQLV 268 CWQAGTTPWN278 IFPVISLYLM288 GEVTNQSFRI298 TILPQQYLRP308 VEDVATSQDD 318 CYKFAISQSS328 TGTVMGAVIM338 EGFYVVFDRA348 RKRIGFAVSA358 CHVHDEFRTA 368 AVEGPFVTLD378 MEDCGYN
|
|||||
|
|
GLY11
3.452
GLN12
3.471
GLY13
3.503
LEU30
3.473
ASP32
2.542
GLY34
2.851
SER35
3.775
VAL69
3.905
PRO70
2.973
TYR71
3.199
THR72
3.025
GLN73
2.510
PHE108
4.287
|
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| References | Top | ||||
|---|---|---|---|---|---|
| REF 1 | Structure-based design and synthesis of macroheterocyclic peptidomimetic inhibitors of the aspartic protease beta-site amyloid precursor protein cleaving enzyme (BACE). J Med Chem. 2006 Jul 27;49(15):4544-67. | ||||
| REF 2 | D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J Comput Aided Mol Des. 2020 Feb;34(2):99-119. | ||||
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